The university offers scholarship from 40% - 50% of credit hour fees for employees of Al-Istiqlal University who are enrolled in the following majors:
| Department | Program | Credit hour fees (NIS) | Scholarship | Credit hour fees after scholarship (NIS) |
|---|---|---|---|---|
| Legal Sciences Department | Master in Commercial Law | 495 | 40% | 297 |
| Master in Civil Law | 495 | 40% | 297 | |
| Master in International Law and Diplomacy | 495 | 40% | 297 | |
| Master of Administrative Law and Constitutional Order | 495 | 40% | 297 | |
| Master in Criminal Sciences | 495 | 40% | 297 | |
| Natural, Engineering and Technology Sciences Department | Master in Cyber Security | 695 | 40% | 417 |
| Master in Artificial Intelligence | 695 | 40% | 417 | |
| Social Sciences Department | Master in Middle Eastern Studies | 495 | 40% | 297 |
| Master in Arabic Language and Literature | 495 | 40% | 297 | |
| Master in Intercultural Communication and Literature | 495 | 50% | 247.5 | |
| Master in Conflict Resolution | 495 | 50% | 247.5 | |
| Master in Translation | 495 | 40% | 297 | |
| Master of Teaching English to Speakers of Other Languages | 495 | 40% | 297 | |
| Educational Sciences Department | Master in Educational Psychology | 495 | 40% | 297 |
| Administrative and Financial Sciences Department | Master in Human Resource Management | 495 | 40% | 297 |
| Master of Quality Management in Health Institutions | 495 | 40% | 297 | |
| Master of Non-Profit Enterprise Management | 495 | 40% | 297 | |
| Master in Quality Management | 495 | 40% | 297 | |
| Master in Construction Management | 495 | 40% | 297 | |
| Master in Leadership | 495 | 40% | 297 | |
| Media and Communication Department | Master in Contemporary Public Relations | 495 | 40% | 297 |
| Master in Media and Mass Communication | 495 | 40% | 297 | |
| Master in Integrated Digital Media | 495 | 40% | 297 | |
| Health Sciences Department | Master in Neonatal Nursing | 560 | 40% | 336 |
| Master in Adult Medical- Surgical- Nursing | 560 | 40% | 336 | |
| Master in Intensive Care Nursing | 560 | 40% | 336 | |
| Master in Nurse Anesthesia | 695 | 40% | 417 |